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Jejunoileal Atresia

ByJaime Belkind-Gerson, MD, MSc, University of Colorado
Reviewed ByAlicia R. Pekarsky, MD, State University of New York Upstate Medical University, Upstate Golisano Children's Hospital
Reviewed/Revised Modified Aug 2025
v8355693
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Jejunoileal atresia is incomplete formation of part of the small intestine. Prenatal diagnosis is by ultrasound or fetal MRI. Postnatal diagnosis is by abdominal radiograph. Treatment is surgical repair. Long-term complications related to short bowel syndrome can arise.

Topic Resources

(See also Overview of Congenital Gastrointestinal Anomalies.)

Neonates with jejunoileal atresia usually present late during day 1 or on day 2 of life with increasing abdominal distention, failure to pass stools, emesis, and feeding problems. A history of polyhydramnios is common.

Etiology of Jejunoileal Atresia

Jejunoileal atresias occur as a result of an ischemic insult during pregnancy. The ischemic insult can be due to intussusception, perforation, volvulus, intestinal strangulation via a hernia, or thromboembolism. Maternal smoking and cocaine use have been associated with intestinal atresia (1).

The estimated incidence is approximately 1 in 10,000 live births. Jejunoileal atresias are equally distributed between the jejunum and ileum (2–5).

Associated congenital anomalies are seen in up to half of cases (6). The most common are urogenital anomalies.

The most common associated conditions are congenital heart disease, cystic fibrosis, malrotation, and gastroschisis.

Peritoneal calcifications suggest the presence of meconium peritonitis, which is a sign of intrauterine intestinal perforation and can be seen in approximately 10% of cases. The presence of meconium peritonitis should raise suspicion of meconium ileus and cystic fibrosis (5).

Etiology references

  1. 1. Sabbatini S, Ganji N, Chusilp S, Balsamo F, Li B, Pierro A. Intestinal atresia and necrotizing enterocolitis: Embryology and anatomy. Semin Pediatr Surg. 2022;31(6):151234. doi:10.1016/j.sempedsurg.2022.151234

  2. 2. Morris G, Kennedy A Jr, Cochran W. Small bowel congenital anomalies: A review and update. Curr Gastroenterol Rep. 2016;18(4):16. doi:10.1007/s11894-016-0490-4

  3. 3. Takahashi D, Hiroma T, Takamizawa S, Nakamura T. Population-based study of esophageal and small intestinal atresia/stenosis. Pediatr Int. 2014;56(6):838-844. doi:10.1111/ped.12359

  4. 4. Best KE, Tennant PW, Addor MC, et al. Epidemiology of small intestinal atresia in Europe: a register-based study. Arch Dis Child Fetal Neonatal Ed. 2012;97(5):F353-F358. doi:10.1136/fetalneonatal-2011-300631

  5. 5. Schmedding A, Hutter M, Gfroerer S, Rolle U. Jejunoileal Atresia: A National Cohort Study. Front Pediatr. 2021;9:665022. Published 2021 May 31. doi:10.3389/fped.2021.665022

  6. 6. Røkkum H, Johannessen H, Bjørnland K. Perioperative and Long-Term Outcome in Patients Treated for Jejunoileal Atresia. J Pediatr Gastroenterol Nutr. 2023;76(4):434-439. doi:10.1097/MPG.0000000000003709

Classification of Jejunoileal Atresia

There are 5 major types of jejunoileal atresia (1):

  • Type I consists of a membrane completely occluding the lumen with the intestine intact.

  • Type II is a gap in the intestine with a fibrous cord between the proximal and distal segments of intestine.

  • Type IIIA is a mesenteric gap without any connection between the segments.

  • Type IIIB is jejunal atresia with absence of the distal superior mesenteric artery; the distal small bowel is coiled like an apple peel, and the gut is short.

  • Type IV consists of multiple atretic segments (resembling a string of sausages).

Classification reference

  1. 1. Martin LW, Zerella JT. Jejunoileal atresia: a proposed classification. J Pediatr Surg. 1976;11(3):399-403. doi:10.1016/s0022-3468(76)80195-9

Diagnosis of Jejunoileal Atresia

  • Prenatal ultrasound or fetal MRI

  • Abdominal radiograph

Prenatally, ultrasound showing dilated loops of small bowel and polyhydramnios, or fetal MRI may suggest or confirm the diagnosis.

Postnatally, a plain abdominal radiograph is performed; it may reveal dilated loops of small bowel with air-fluid levels and a paucity of air in the colon and rectum. A barium enema reveals a microcolon (due to disuse).

Jejunal Atresia
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This radiograph of an infant with proximal jejunal atresia shows large dilated loops in the upper abdomen with no distal gas.
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Because 7 to 10% of patients also have cystic fibrosis (nearly 100% if meconium ileus is also present), testing for cystic fibrosis should be performed (1, 2). Screening for associated anomalies should also be considered.

Diagnosis references

  1. 1. Roberts HE, Cragan JD, Cono J, et al. Increased frequency of cystic fibrosis among infants with jejunoileal atresia. Am J Med Genet. 1998; 78(5):446-449. doi:10.1002/(sici)1096-8628(19980806)78:5<446::aid-ajmg9>3.0.co;2-j

  2. 2. Schmedding A, Hutter M, Gfroerer S, Rolle U. Jejunoileal Atresia: A National Cohort Study. Front Pediatr. 2021;9:665022. Published 2021 May 31. doi:10.3389/fped.2021.665022

Treatment of Jejunoileal Atresia

  • Surgical repair

Preoperative management of jejunoileal atresia consists of placing a nasogastric tube, giving nothing by mouth, and providing IV fluids.

Surgical repair is the definitive therapy. During surgery, the entire intestine should be inspected for multiple areas of atresia. The atretic portion is resected, usually with a primary anastomosis. If the proximal portion of the ileum is extremely dilated and difficult to anastomose to the distal, unused part of the intestine, it is sometimes safer to do a double-barreled ileostomy and defer anastomosis until the caliber of the distended proximal intestine has diminished. A procedure that tapers the dilated proximal loop is also a consideration (1, 2).

The prognosis for infants with jejunoileal atresia is very good with > 90% survival (3, 4). Prognosis is based on the length of remaining small bowel and the presence of the ileocecal valve. Infants who subsequently develop short bowel syndrome require parenteral nutrition (PN) for extended periods (5). They should be provided continuous enteral feedings to promote gut adaptation, maximize absorption, and minimize the use of PN. Infants should also be provided small amounts of nutrition by mouth to maintain sucking and swallowing. Prognosis for infants with ultrashort bowel syndrome has improved significantly because of surgical techniques including bowel-lengthening procedures (eg, serial transverse enteroplasty procedure or STEP), improved medical care, and the ability to perform small bowel transplantation (6–8).

Treatment references

  1. 1. Dewberry LC, Hilton SA, Vuille-Dit-Bille RN, Liechty KW. Is tapering enteroplasty an alternative to resection of dilated bowel in small intestinal atresia? J Surg Res. 2020;246:1–5. doi:10.1016/j.jss.2019.08.014

  2. 2. Eeftinck Schattenkerk LD, Backes M, de Jonge WJ, van Heurn EL, Derikx JP. Treatment of jejunoileal atresia by primary anastomosis or enterostomy: Double the operations, double the risk of complications. J Pediatr Surg. 2022;57(9):49-54. doi:10.1016/j.jpedsurg.2021.07.021

  3. 3. Røkkum H, Johannessen H, Bjørnland K. Perioperative and Long-Term Outcome in Patients Treated for Jejunoileal Atresia. J Pediatr Gastroenterol Nutr. 2023;76(4):434-439. doi:10.1097/MPG.0000000000003709

  4. 4. Duggan CP, Jaksic T. Pediatric Intestinal Failure. N Engl J Med. 2017;377(7):666-675. doi:10.1056/NEJMra1602650

  5. 5. Rich BS, Bornstein E, Dolgin SE. Intestinal Atresias. Pediatr Rev. 2022;43(5):266-274. doi:10.1542/pir.2021-005177

  6. 6. Pandey A, Singh G, Shandilya G, et al. Role of Bishop–Koop procedure for jejunal and proximal ileal atresia. J Neonatal Surg. 2020;8(4):31. doi:10.47338/jns.v8.356

  7. 7. Batra A, Keys SC, Johnson MJ, et al. Epidemiology, management and outcome of ultrashort bowel syndrome in infancy. Arch Dis Child Fetal Neonatal Ed. 2017;102(6):F551–F556. doi:10.1136/archdischild-2016-311765

  8. 8. Squires RH, Duggan C, Teitelbaum DH, et al. Natural history of pediatric intestinal failure: Initial report from the Pediatric Intestinal Failure Consortium. J Pediatr. 2012;161:723–728. doi:10.1016/j.jpeds.2012.03.062

Key Points

  • Jejunoileal atresia usually presents in the first day or two of life with signs of bowel obstruction.

  • Cystic fibrosis, malrotation, gastroschisis, and congenital heart disease are commonly associated conditions.

  • Give nothing by mouth and provide nasogastric tube suction and IV fluids pending surgical repair.

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